Afrique du Sud

• University of Witwatersrand
• Distong National Museums

Botswana

• Okavango Research Institute
• University of Botswana

République Démocratique du Congo

• Observatoire Volcanologique de Goma
• Kinshasa University

Djibouti

• Centre d’Etude et de Recherche de Djibouti (CERD)
• Institut de Recherches Archéologiques et Historiques
• Institut des Sciences de la Terre du CERD
• Institut Français de Djibouti

Ethiopie

• Addis Abeba University
• Debre Berhan University
• Authority for Research and Conservation of Cultural Heritage (ARCCH)
• Centre français des études éthiopiennes (CFEE)
• Musée National d’Ethiopie (Addis Abeba)

Kenya

• University of Nairobi
• Egerton University
• Jaramogi Oginga Odinga University
• Maasai Mara University (Narok)
• National Museums of Kenya
• Turkana Basin Institute

Namibie

• National Museum of Namibia

Ouganda

• Uganda Museum Kampala
• Makerere University
• Makerere Institute of Social Research

Rwanda

• ICTP-East African Institute for Fundamental Research (EAIFR), University of Rwanda

Tanzanie

• Nelson Mandela African Institute of Sciences and Technology (NMAIST) Arusha
• University of Dodoma, Department of Geology, College of Earth Sciences
• Oikos East Africa
• Dar Es Salaam University, school of mines and geosciences
• Ardhi University
• Mineral Resources Institute
• Tanzania Wildlife Research Institute
• Ngorongoro Conservation area Authority

Autres instituts partenaires

• Anthropology Unit Department of Genetics and Evolution University of Geneva (Switzerland)
• Museum für Naturkunde, Leibniz Institute for Evolution and Biodiversity Science, Berlin, Germany